Cell Graph Publications

  1. Histopathology - Cancer related cell graph research

    • Augmented Cell-graphs for Automated Cancer Diagnosis. with C. Demir and S. H. Gultekin. in BIOINFORMATICS Vol. 21 Suppl. 2 2005 pp 7--12. (Presented in Proc. of ECCB, October 2005). PDF
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    • Learning the Topological Properties of Brain Tumors. with C. Gunduz and S. H. Gultekin. in IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol2. No. 3, July-September 2005. PDF
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    • Spectral Analysis of Cell-graphs for Automated Cancer Diagnosis. with C. Demir and S. H. Gultekin. in Proc. of 4th Conference on Modeling and Simulation in Biology, Medicine and Biomedical Engineering, Linkoping, Sweden, May 2005. PDF
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    • The Cell-Graphs of Cancer. with C. Gunduz and S. H. Gultekin. in BIOINFORMATICS Vol. 20 Suppl. 2004, pp 145-151 (presented in Proc. of International Symposium on Molecular Biology ISMB/ECCB, July, 2004). PDF
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  2. Tissue Modeling

    • Nanofiber artificial scaffolds regulate salivary gland epithelial cell morphology and focal adhesion complex formation. S. J. Sequeira, D. Soscia, B. Oztan, R. Jean-Gilles, A. Gadre, B. Yener, J. Castracane, and M. Larsen, (submitted for review) Biomaterials, June 2011.

    • Quantitative metric profiles capture three-dimensional temporospatial architecture to discriminate cellular functional states. L. McKeen-Polizzotti, K. Henderson, B. Oztan, C. C. Bilgin, B. Yener, and G. E. Plopper. BMC Medical Imaging, July 2011. PDF
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    • Graph Theoretical Methods for Tissue Modeling and Classification. C. C. Bilgin. Ph.D. Thesis, Rensselaer Polytechnic Institute, June 2011. PDF

    • ECM-Aware Cell-Graph Mining for Bone Tissue Modeling and Classification. C. C. Bilgin, P. Bullough, G. E. Plopper, B. Yener. Journal of Data Mining and Knowledge Discovery, 20:416-438 2009. PDF
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    • Quantification of Three-Dimensional Cell-Mediated Collagen Remodeling Using Graph Theory. C. C. Bilgin, A. W. Lund, A. Can, G. E. Plopper, B. Yener, 2010. PLoS ONE 5(9): e12783. doi:10.1371/journal.pone.0012783. PDF
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    • Quantification of spatial parameters in 3D cellular constructs using graph theory. A. W. Lund, C. C. Bilgin, M. A. Hasan, L. M. McKeen, J. P. Stegemann, B. Yener, M. J. Zaki, G. E. Plopper. J Biomed Biotechnol. 2009;2009:928286. Epub 2009 Nov 10. PDF
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    • Cell-Graph Mining for Breast Tissue Modeling and Analysis. with C. Bilgin, C. Demir, C. Nagi. in Proc. of IEEE EMBC 2007, August 2007. PDF
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  3. Modeling and Mining of Branching Morphogenesis

    • A novel Dynamic Graph-Based Computational Model for Predicting Salivary Gland Branching Morphogenesis. N. Dhulekar, L. Bange, A. Baskaran, D. Yuan, B. Oztan, S. Ray, and M. Larsen. In Proc. of IEEE International Conf. on Bioinformatics and Biomedicine (BIBM) 2012. PDF
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    • Multiscale Feature Analysis of Branching Morphogenesis. C. C. Bilgin, S. Ray, W. Daley, B. Baydil, B. Yener, M. Larsen. PLoS ONE, 2012. PDF
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    • Cell-Graph Modeling of Salivary Gland Morphology. C. C. Bilgin, S. Ray, W. Daley, B. Baydil, S. Sequeira, B. Yener, M. Larsen. ISBI April 14-18 2010, Rotterdam, Netherlands. PDF
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    • Quantification of Changes in Salivary Gland Morphology Using Cell Graphs. C. C. Bilgin, S. Ray, W. Daley, B. Baydil, S. Sequeira, B. Yener, M. Larsen. 39th Annual Meeting of the American Association for Dental Research, Washington, DC March 3-6, 2010.
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